Bioinformatics

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Bioinformatics > Arraytop
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COG

COG database
Microarray

MADAM, Spotfinder, Arrayviewer, Multiexperimentviewer
MicroArray

MicroArray related activities at the EBI
Bioconductor

open source and open development software project for the analysis and comprehension of genomic data
general

Pat Brown
MA-ANOVA

set of functions written in Matlab for the analysis of variance on microarray data
SAM

Significance Analysis of Microarrays
GSCope

SOM Clustering and Gene-Ontology Analysis of Microarray Data
Collection of links

THE ANALYSIS OF GENE EXPRESSION DATA:
GeneClust

Tool for exploratory analysis of gene expression microarray data.
Venny

Venn diagram
Array centre

Washington Array Centre

Bioinformatics > bioinformaticstop
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COG

COG database
EMBOSS

EMBOSS The European Molecular Biology Open Software Suite
PSB

PSB Online Proceedings
CMBI

The CMBI offers a course programme with selected topics from Cheminformatics and Bioinformatics.
GCT

The Genomics CenterT

Bioinformatics > genomicstop
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BRIG

BLAST Ring Image Generator
JCVI tools

Comparative genomics tools
MAUVE

Multiple genome alignment
OBO

Open Biomedical Ontologies
Artemis etc...

Sanger Software

Bioinformatics > Informatics_tutorialstop
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PHP

Handleiding and manual
SQL

SQL tutorial on the building blocks of SQL

Bioinformatics > Informationtop
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Source code

O Reilly

Bioinformatics > ITtop
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MSQL home

homepage MSQL
MySQL

MySQL original site
PHP

PHP referentie
VSLsoftw

Virtual Shareware LibrarySoftware

Bioinformatics > MicroArraytop
linkdescription
MicroArray

MicroArray related activities at the EBI
general

Pat Brown
Venny

Venn diagram

Bioinformatics > Miscellaneoustop
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Bioinformatics

Startpagina.nl

Bioinformatics > motifstop
linkdescription
MEME

Motif finding
SCOPE

Suite for Computational identification Of Promoter Elements

Bioinformatics > pathwaytop
linkdescription
KEGG API

API wdsl manual for KEGG
Bioch Pathw

Biochemical Pathways.
KEGG compounds

Compounds database
PRODORIC

PROkaryotIC Database Of Gene Regulation And Regulatory NETworks
GSCope

SOM Clustering and Gene-Ontology Analysis of Microarray Data

Bioinformatics > proteintop
linkdescription
STRAP

Interactive Structure based Sequences Alignment Program STRAP
PRF in Japan.

Protein Research Foundation in Japan.
Proteopedia

Wiki of Proteins and 3D

Bioinformatics > RNAtop
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RNA-seq

RNA-seq software

Bioinformatics > R_statisticstop
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R

A language and environment for statistical computing and graphics
Zelig

GUI for R
Bioconductor

open source and development software project for analysis and comprehension of genomic data
R

Windows version

Bioinformatics > servertop
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GEO

Gene Expression Omnibus
AntiBP

Prediction of the antibacterial peptides bacteriocin

Bioinformatics > softwaretop
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1 page 4 all

Big overview of DNA-array software
BioEdit

biological sequence alignment editor win98/nt
Genesis

Clustering collection of many methods Freeware
Cyber-T GeneX

Cyber-T is a Web interface designed to reliably detect changes in gene expression
Delphi

Delphi components Jans-freeware
Misc

Genetics and Molecular Biology Software for the PC
TIGR software

Genomic and Array software Freeware
MIT

MIT VoigtLab webtools
MAUVE

Multiple genome alignment
Java netbeans

Net Beans
Cell Designer

Network reconstruction System Biology
Cytoscape

Network reconstruction System Biology



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